tcode - Identify protein-coding regions using Fickett TESTCODE statistic

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EMBOSS 6.4.0                                       05/11/2012                                          TCODE(1e)

tcode is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is
       part of the "Nucleic:Gene finding" command group(s).

       tcode - Identify protein-coding regions using Fickett TESTCODE statistic

Inputsection-sequenceseqall-datafiledatafile
           The default data file is Etcode.dat and contains coding probabilities for each base. The
           probabilities are for both positional and compositional information. Default value: Etcode.dat

   Requiredsection-windowinteger
           This is the number of nucleotide bases over which the TESTCODE statistic will be performed each time.
           The window will then slide along the sequence, covering the same number of bases each time. Default
           value: 200

   Advancedsection-stepinteger
           The selected window will, by default, slide along the nucleotide sequence by three bases at a time,
           retaining the frame (although the algorithm is not frame sensitive). This may be altered to increase
           or decrease the increment of the slide. Default value: 3

   Outputsection-plottoggle
           On selection a graph of the sequence (X axis) plotted against the coding score (Y axis) will be
           displayed. Sequence above the green line is coding, that below the red line is non-coding. Default
           value: N

       -outfilereport-graphxygraph

       tcode is fully documented via the tfm(1) system.

tcode-sequenceseqall-datafiledatafile-windowinteger-stepinteger-plottoggle-outfilereport-graphxygraphtcode-help