vcf2dag

Authors

       Erik Garrison and vcflib contributors.

vcf2dag (vcflib)                                                                                      VCF2DAG(1)

Description

       Modify VCF to be able to build a directed acyclic graph (DAG)

Exit Values

0      Success

       not0  Failure

License

       Copyright  2011-2024  (C)  Erik Garrison and vcflib contributors.  MIT licensed.  Copyright 2020-2024 (C)
       Pjotr Prins.

Name

vcf2dag

Options

              options:
                  -r, --reference FILE         FASTA reference file.

              Modify the VCF file so that homozygous regions are included as REF/. calls.
              For each ref and alt allele, assign an index.  These steps are sufficient to
              enable use of the VCF as a DAG (specifically a partially-ordered graph).

              Type: transformation