vcfgenotypes

       Erik Garrison and vcflib contributors.

vcfgenotypes (vcflib)                                                                            VCFGENOTYPES(1)

       Report  the  genotypes for each sample, for each variant in the VCF.  Convert the numerical represenation
       of genotypes provided by the GT field to a human-readable genotype format.

              Example:

                    **vcfgenotypes** samples/sample.vcf

              19      111     A       C       A,C     NA00001:A/A     NA00002:A/A     NA00003:A/C
              19      112     A       G       A,G     NA00001:A/A     NA00002:A/A     NA00003:A/G
              20      14370   G       A       G,A     NA00001:G/G     NA00002:G/A     NA00003:A/A
              20      17330   T       A       T,A     NA00001:T/T     NA00002:T/A     NA00003:T/T
              20      1110696 A       G,T     A,G,T   NA00001:G/T     NA00002:G/T     NA00003:T/T
              20      1230237 T       .       T,.     NA00001:T/T     NA00002:T/T     NA00003:T/T
              20      1234567 G       GA,GAC  G,GA,GAC        NA00001:G/GA    NA00002:G/GAC   NA00003:GA/GA
              20      1235237 T       .       T,.     NA00001:T/T     NA00002:T/T     NA00003:./.
              X       10      AC      A,ATG   AC,A,ATG        NA00001:AC      NA00002:AC/A    NA00003:AC/ATG

              Type: statistics

0      Success

       not0  Failure

       Copyright 2011-2024 (C) Erik Garrison and vcflib contributors.  MIT licensed.   Copyright  2020-2024  (C)
       Pjotr Prins.

vcfgenotypes

vcflib(1)

vcfgenotypes