logo
Free, unlimited AI code reviews that run on commit
git-lrc git-lrc GitHub Install Now We'd appreciate a star git-lrc - Free, unlimited AI code reviews that run on commit | Product Hunt git-lrc - Free, unlimited AI code reviews that run on commit | Product Hunt

gbrowse_syn_load_alignment_database - Script to load the database for gbrowse_syn

Author

       Olivier Sallou (olivier.sallou (at) irisa.fr) - Man page and packaging Lincoln Stein - GBrowse

version 1.1.0                                   October 18, 2011                                     GBrowse2(1)

Description

        The expected file format is tab-delimited (shown below):
        species1   ref1   start1  end1 strand1  cigar_string1 species2  ref2  start2 end2 strand2  cigar_string2
       coords1... | coords2...
        the coordinate format: pos1_species1  pos1_species2  ...  posn_species1  posn_species2  |  pos1_species2
       pos1_species1 ... posn_species2 posn_species1,
        where pos is the matching sequence coordinate (ungapped) in each species.

Name

       gbrowse_syn_load_alignment_database - Script to load the database for gbrowse_syn

See Also