lefse_plot_features.py - determine features of organisms, clades, taxonomic units, genes

       This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage
       of the program.

lefse_plot_features.py 1.1.2                     September 2021                        LEFSE_PLOT_FEATURES.PY(1)

       usage: lefse_plot_features.py [-h] [--width WIDTH] [--height HEIGHT]

       [--top TOP] [--bot BOT]
              [--title_font_size   TITLE_FONT_SIZE]   [--class_font_size   CLASS_FONT_SIZE]   [--class_label_pos
              {up,down}] [--subcl_mean {y,n}] [--subcl_median {y,n}] [--font_size FONT_SIZE] [-n flt]  [--format
              {png,pdf,svg}]  [-f  {all,diff,one}]  [--feature_name  FEATURE_NAME]  [--feature_num  FEATURE_NUM]
              [--archive {zip,none}] [--background_color {k,w}] [--dpi DPI] INPUT_FILE INPUT_FILE OUTPUT_FILE

       Cladoplot

   positionalarguments:
       INPUT_FILE
              dataset files

       INPUT_FILE
              LEfSe output file

       OUTPUT_FILE
              the file for the output (the zip file if an archive is required, the output directory otherwise)

   optionalarguments:-h, --help
              show this help message and exit

       --width WIDTH

       --height HEIGHT

       --top TOP
              set maximum y limit (-1.0 means automatic limit)

       --bot BOT
              set minimum y limit (default 0.0, -1.0 means automatic limit)

       --title_font_size TITLE_FONT_SIZE

       --class_font_size CLASS_FONT_SIZE

       --class_label_pos {up,down}

       --subcl_mean {y,n}

       --subcl_median {y,n}

       --font_size FONT_SIZE

       -n flt
              unused

       --format {png,pdf,svg}
              the format for the output file

       -f {all,diff,one}
              whether to plot all features (all), only those differentially abundant according to LEfSe or  only
              one (the one given with --feature_name)

       --feature_name FEATURE_NAME
              The name of the feature to plot (levels separated by .)

       --feature_num FEATURE_NUM
              The number of the feature to plot

       --archive {zip,none}

       --background_color {k,w}
              set the color of the background

       --dpi DPI

       lefse_plot_features.py - determine features of organisms, clades, taxonomic units, genes