subindel - toolkit for processing next-gen sequencing data

        This manpage was written by Alexandre Mestiashvili for the Debian distribution and
        can be used for any other usage of the program.

subindel 2.0.3                                     March 2023                                        SUBINDEL(1)

       SubIndel: detect short and long indels

   Usage:
              subindel  -i  <SAM  file> -g <subread index> -o <output VCF> {-d <expected fragment distance>} {-I
              <max indel length>} {--paired-end}

   Example:
              subindel -i my_paired_end_reads.SAM -g my_index -o my_result -d 300 -I 200 --paired-end

       subindel - toolkit for processing next-gen sequencing data