removeDup - toolkit for processing next-gen sequencing data

        This manpage was written by Alexandre Mestiashvili for the Debian distribution and
        can be used for any other usage of the program.

removeDup 2.0.3                                    March 2023                                       REMOVEDUP(1)

       removeDup Version 2.0.4

              Remove duplicated reads.

   Usage:
              ./removeDup [options] -i <input_file> -o <output_file>

       Required arguments:

       -i <string> Name of input file in SAM/BAM format.

       -o <string> Name of output SAM file including filtered reads. The format is

              BAM unless '-S' is specified.

       Optional arguments:

       -S     Generate the SAM format output.

       -r <int>
              Specify  the duplication cutoff. All the reads mapped to a location are removed from the output if
              the number of reads mapped to this location is equal or higher than the cutoff. 10 by default.

       -t <string> A directory storing temporary files generated by the program.

       removeDup - toolkit for processing next-gen sequencing data