sand_uncompress_reads - uncompress sequence data
Contents
Copyright
The Cooperative Computing Tools are Copyright (C) 2022 The University of Notre Dame. This software is
distributed under the GNU General Public License. See the file COPYING for details.
Description
sand_uncompress_reads reads sequence data in compressed FASTA format (cfa) used by sand_filter_master(1) and sand_align_master(1). and produces output in the standard FASTA format. If the output file is omitted, standard output is used. if the input file is omitted, standard input is used. After completing the compression, this program will output a summary line of sequences and bytes compressed.
Examples
To uncompress mydata.cfa into mydata.fasta:
% sand_uncompress_reads mydata.cfa mydata.fa
Exit Status
On success, returns zero. On failure, returns non-zero.
Name
sand_uncompress_reads - uncompress sequence data
Options
-q Quiet mode: suppress summary line.
-h Display version information.
-v Show help text.
See Also
• CooperativeComputingToolsDocumentation
• SANDUserManual
• sand_filter_master(1)sand_filter_kernel(1)sand_align_master(1)sand_align_kernel(1)sand_com‐press_reads(1)sand_uncompress_reads(1)work_queue_worker(1)
CCTools 7.14.5 FINAL sand_uncompress_reads(1)
Synopsis
sand_uncompress_reads [-qvh] [infile] [outfile]
