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sand_uncompress_reads - uncompress sequence data

Description

sand_uncompress_reads  reads sequence data in compressed FASTA format (cfa) used by sand_filter_master(1)
       and sand_align_master(1).  and produces output in the standard FASTA format.

       If the output file is omitted, standard output is used.  if the input file is omitted, standard input  is
       used.   After  completing the compression, this program will output a summary line of sequences and bytes
       compressed.

Examples

       To uncompress mydata.cfa into mydata.fasta:

               % sand_uncompress_reads mydata.cfa mydata.fa

Exit Status

       On success, returns zero.  On failure, returns non-zero.

Name

sand_uncompress_reads - uncompress sequence data

Options

-q    Quiet mode: suppress summary line.

        -h    Display version information.

        -v    Show help text.

See Also

CooperativeComputingToolsDocumentationSANDUserManualsand_filter_master(1)sand_filter_kernel(1)sand_align_master(1)sand_align_kernel(1)sand_com‐press_reads(1)sand_uncompress_reads(1)work_queue_worker(1)

CCTools 7.14.5 FINAL                                                                    sand_uncompress_reads(1)

Synopsis

       sand_uncompress_reads [-qvh] [infile] [outfile]

See Also