trna2sap - convert tRNAscan-SE output to an ASN.1 Seq-annot object

       The National Center for Biotechnology Information.

trna2sap reads a text file produced by tRNAscan-SE and produces a corresponding ASN.1  Seq-annot  in  the
       format understood by other NCBI tools.

       trna2sap - convert tRNAscan-SE output to an ASN.1 Seq-annot object

       A summary of options is included below.

       -      Print usage message

       -a     Add tRNAscan-SE citation

       -cstr Comment

       -fstr Substring Filter

       -ifilename
              Single Input file (standard input by default)

       -j     Just produce a five-column feature table, à la trna2tbl(1).

       -mstr ReMark

       -nstr Annotation Name (normally “tRNA”).

       -ofilename
              Single Output file (standard output by default)

       -pdir Path to files

       -rdir Path for Results

       -s     Ignore Pseudo tRNAs

       -tstr Annotation Title (normally “tRNAscan-SE”).

       -u     Ignore Undetermined tRNAs

       -xstr File selection suffix with -p (.trna by default).

sequin(1), tbl2asn(1), trna2tbl(1).

NCBI                                               2006-01-11                                        TRNA2SAP(1)

trna2sap  [-] [-a] [-cstr] [-fstr] [-ifilename] [-j] [-mstr] [-nstr] [-ofilename] [-pdir] [-rdir]
       [-s] [-tstr] [-u] [-xstr]