ace2sam - ace to sam converter

       This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage
       of the program.

ace2sam 1.2                                       December 2015                                       ACE2SAM(1)

       ace2sam - ace to sam converter

-p     output padded SAM

       -c     write the contig sequence in SAM

       Notes: 1. Fields must appear in the following order: (CO->[BQ]->(AF)->(RD->QA))

              2. The order of reads in AF and in RD must be identical

              3. Except in BQ, words and numbers must be separated by a single SPACE or TAB

              4. This program writes the headerless SAM to stdout and header to stderr

ace2sam [-pc] <in.ace>