alignment-translate - Translate a DNA/RNA alignment into amino acids.

-h, –help
              Produce help message

       -garg (=standard), –genetic-codearg (=standard)
              Specify alternate genetic code.

       -farg (=1), –framearg (=1)
              Frame 1, 2, 3, -1, -2, or -3

       -r, –reverse
              Just return the reverse

       -c, –complement
              Just return the complement

       -targ (=yes), –translatearg (=yes)
              Translate the sequences

       Benjamin Redelings.

                                                    Feb 2018                              alignment-translate(1)

       Translate a DNA/RNA alignment into amino acids.

       Translate DNA or RNA to amino acids in reading frame 1:

              % alignment-translate < dna.fasta > aa.fasta

       Give the reverse complement without translation:

              % alignment-translate -rc --translate=no < dna.fasta > dna2.fasta

       The following commands are identical:

              % alignment-translate --frame=-2 < dna.fasta > aa2.fasta
              % alignment-translate -rc --frame=2 < dna.fasta > aa2.fasta

alignment-translate - Translate a DNA/RNA alignment into amino acids.

       BAli-Phy online help: <http://www.bali-phy.org/docs.php>.

       Please send bug reports to <bali-phy-users@googlegroups.com>.

alignment-translate [OPTIONS] < sequence-file [OPTIONS]