AlignRecords.py - Repertoire clonal assignment toolkit (Python 3)

        This manpage was written by Nilesh Patra for the Debian distribution and
        can be used for any other usage of the program.

AlignRecords.py 1.0.1                             October 2020                                ALIGNRECORDS.PY(1)

       usage: AlignRecords.py [--version] [-h]  ...

       Multiple aligns sequence fields

   help:--version
              show program's version number and exit

       -h, --help
              show this help message and exit

   subcommands:
              alignment method

       across Multiple aligns sequence columns within groups and across rows using MUSCLE.

       within Multiple aligns sequence fields within rows using MUSCLE

       block  Multiple aligns sequence groups across both columns and rows using MUSCLE.

   outputfiles:
              align-pass

              database with multiple aligned sequences.

              align-fail

              database with records failing alignment.

   requiredfields:
              sequence_id, v_call, j_call <field>

              user specified sequence fields to align.

   outputfields:
              <field>_align

       AlignRecords.py - Repertoire clonal assignment toolkit (Python 3)