asn2fsa - convert biological sequence data from ASN.1 to FASTA

       The National Center for Biotechnology Information.

asn2fsa converts biological sequence data from ASN.1 to FASTA.

       asn2fsa - convert biological sequence data from ASN.1 to FASTA

       A summary of options is included below.

       -      Print usage message

       -Aacc Accession to fetch

       -D     Use Dash for Gap

       -E     Extended Seq-ids

       -H     HTML spans

       -Lfilename
              Log file

       -T     Use Threads

       -atype
              Input ASN.1 type:
              a      Automatic (default)
              z      Any
              e      Seq-entry
              b      Bioseq
              s      Bioseq-set
              m      Seq-submit
              t      batch processing (suitable for official releases; autodetects specific type)

       -b     Bioseq-set is Binary

       -c     Bioseq-set is Compressed

       -dpath
              Path to ReadDB Database

       -eN   Line length (70 by default; may range from 10 to 120)

       -fpath
              Path to indexed FASTA data

       -g     Expand delta gaps into Ns

       -hfilename
              Far component cache output file name

       -ifilename
              Single input file (standard input by default)

       -k     Local fetching

       -l     Lock components in advance

       -m     Master style for near segmented sequences

       -ofilename
              Nucleotide Output file name

       -ppath
              Path to ASN.1 Files

       -qfilename
              Quality score output file name

       -r     Remote fetching from NCBI

       -s     Far genomic contig for quality scores

       -u     Recurse

       -vfilename
              Protein output file name

       -xstr File selection substring (.ent by default) [String]

       -y     Debugging

       -z     Print quality score gap as -1

asn2all(1), asn2asn(1), asn2ff(1), asn2gb(1), asn2xml(1), asndhuff(1).

NCBI                                               2016-09-01                                         ASN2FSA(1)

asn2fsa  [-]  [-Aacc]  [-D]  [-E] [-H] [-Lfilename] [-T] [-atype] [-b] [-c] [-dpath] [-eN] [-fpath]
       [-g] [-hfilename] [-ifilename] [-k] [-l] [-m] [-ofilename]  [-ppath]  [-qfilename]  [-r]  [-s]  [-u]
       [-vfilename] [-xstr] [-y] [-z]