asn2idx - index ASN.1 Bioseq-sets for fast access to individual sequences
Contents
Description
asn2idx indexes ASN.1 Bioseq-sets (such as GenBank release files) to speed retrieval of the individual
sequences they contain. For each file that it processes, it yields an output file in the same directory
with the extension .idx.
Name
asn2idx - index ASN.1 Bioseq-sets for fast access to individual sequences
Options
A summary of options is included below.
- Print usage message
-b Bioseq-sets are Binary
-ddir Required Subdirectory
-ffilter
Filter (default = gbcon,gbest,gbgss,gbhtg,gbsts)
-ppath
Path to Files
-ppath
Path for Results
-t Recurse
-xstr File Selection Substring (default = .aso)
See Also
asn2asn(1), asndhuff(1). NCBI 2008-12-13 ASN2IDX(1)
Synopsis
asn2idx [-] [-b] [-ddir] [-ffilter] -ppath [-rpath] [-t] [-xstr]
