asn2xml - translate biological data from ASN.1 to XML
Contents
Description
asn2xml converts an NCBI Seq-entry or Bioseq-set from ASN.1 format to an isomorphic XML representation.
It differs from asn2asn-x in that it converts packed sequence data back into human-readable ASCII text.
Name
asn2xml - translate biological data from ASN.1 to XML
Options
A summary of options is included below.
- Print usage message
-bF Input asnfile in text mode
-e Input is a Seq-entry
-ifilename
Read ASN.1 from filename (default is stdin)
-lfilename
Log errors to filename (default is stderr)
-ofilename
Write XML to filename (default is stdout)
-s Input is a Seq-submit
See Also
asn2all(1), asn2asn(1), asn2ff(1), asn2fsa(1), asn2gb(1), asndhuff(1), gene2xml(1), /usr/share/doc/ncbi- tools-bin/README.asn2xml, /usr/share/doc/libncbi6t64/ncbixml.txt.gz NCBI 2005-05-16 ASN2XML(1)
Synopsis
asn2xml [-] [-bF] [-e] [-ifilename] [-lfilename] [-ofilename] [-s]
