avg_adm - Average using ADM

       CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium  on  Alcohol  and
       Neurodevelopment  in Adolescence (N-CANDA): Data Integration Component. From April 2009 through September
       2011, CMTK development and maintenance was supported by the NIBIB under Grant EB008381.

CMTK 3.3.1p2                                       Feb 26 2025                                        avg_adm(1)

       Torsten  Rohlfing,  with  contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, Daniel B.
       Russakoff, and Yaroslav Halchenko

       Report bugs at http://nitrc.org/projects/cmtk/

       Compute average-shape average-intensity images and deformation maps using an active deformation model.

http://www.fsf.org/licensing/licenses/gpl.html

       avg_adm - Average using ADM

GlobalToolkitOptions(thesearesharedbyallCMTKtools)--help
            Write list of basic command line options to standard output.

       --help-all
            Write complete list of basic and advanced command line options to standard output.

       --wiki
            Write list of command line options to standard output in MediaWiki markup.

       --man
            Write man page source in 'nroff' markup to standard output.

       --version
            Write toolkit version to standard output.

       --echo
            Write the current command line to standard output.

       --verbose-level<integer>
            Set verbosity level.

       --verbose, -v
            Increment verbosity level by 1 (deprecated; supported for backward compatibility).

       --threads<integer>
            Set maximum number of parallel threads (for POSIX threads and OpenMP).

   MainOptions--label, -l
            Label mode (as opposed to grey)

       --set-padding<float>
            Set padding value in input files [Default:disabled]--replace-padding<float>
            Replace padding value in input files [Default:disabled]--pad-out<double>, -p<double>
            Padding value for output file [Default:disabled]--jacobian, -j
            Average Jacobian determinants of deformations.

       --auto-scale, -a
            Auto-scale image intensities

       --char
            Output is 8 bits, signed [default: automatic]

       --byte
            Output is 8 bits, unsigned

       --short
            Output is 16 bits, signed

       --ushort
            Output is 16 bits, unsigned

       --int
            Output is 32 bits signed

       --float
            Output is 32 bits floating point

       --double
            Output is 64 bits floating point

       --no-scale-model, -S
            Exclude scale from statistical deformation model

       --no-ref-model, -R
            Exclude reference coordinate frame from deformation model

       --no-ref-data, -r
            Exclude reference data from averaging

       --output<string>, -o<string>
            Output file name [FORMAT:]path [Default:NONE]--input-warp<string>, -I<string>
            Input file name for average warp [Default:NONE]--output-warp<string>, -O<string>
            Output file name for average warp [Default:NONE]--with-affine, -A
            Include affine component of first warp in output

       --nn Use nearest neigbor interpolation

       --cubic
            Use tri-cubic interpolation

       --replace-from<string>
            Replace from pattern

       --replace-to<string>
            Replace to pattern

       avg_adm [options] list0 [list1 ...]