bamcleanheader.py - remove illegal and malformed fields from a BAM file's header

        This manpage was written by Andreas Tille for the Debian distribution and
        can be used for any other usage of the program.

bamcleanheader.py 0.0.1+git20170413.ccd079d         June 2020                               BAMCLEANHEADER.PY(1)

       remove illegal and malformed fields from a BAM file's header

       bamcleanheader.py - remove illegal and malformed fields from a BAM file's header

positionalarguments:
       input  SAM/BAM file to inject header lines into. If '-' or absent then defaults to stdin.

   optionalarguments:-h, --help
              show this help message and exit

       -S, --is_sam
              input is SAM

bamcleanheader.py [-h] [-S] [input [input ...]]