bamindex - create index for BAM file

       Written by German Tischler.

       Copyright  ©  2009-2013  German  Tischler,  © 2011-2013 Genome Research Limited.  License GPLv3+: GNU GPL
       version 3 <http://gnu.org/licenses/gpl.html>
       This is free software: you are free to change and redistribute it.  There is NO WARRANTY, to  the  extent
       permitted by law.

BIOBAMBAM                                           July 2013                                        BAMINDEX(1)

       bamindex  reads  a BAM file from standard input and produces a BAM index (.bai) file for this BAM file on
       standard output.

       verbose=<1>: Valid values are

       1:     print progress report on standard error

       0:     do not print progress report

       tmpfile=<filename>: set the prefix for temporary file names.  By default temporary files are  created  in
       the current directory.

       bamindex - create index for BAM file

       Report bugs to <germant@miltenyibiotec.de>

bamindex [options]