beads - 2D gel electrophoresis spot detection
Contents
Copyright
Copyright CeCILL
Description
detect and quantify spots in INPUT gel image file.
-i path to the gel image input file
-o path to the output file
-p, --param
path to the parameter file
--inverse
inverse pixel intensity in the source gel image, must be "true" or "false" ("true" by default)
--steps
save each image computed by beads at each step of the process into TIFF files. This option can be
used to tune parameter file.
Name
beads - 2D gel electrophoresis spot detection
Output
beads produces several files format as output: xml, txt, jpg, tif and svg. To choose the output file
format, just write the corresponding extension in the output filename OUTPUT
See Also
The beads homepage :
http://pappso.inra.fr/bioinfo/beads/index.php
Manual for beads 2009 Dec 5 BEADS(1)
Synopsis
beads [--inverse--steps-pparameterfile]... -iINPUT-oOUTPUT
