bed2bed_display - Convert BED file to BED format suitable for displaying ChIP-seq peaks.

        This manpage was written by Andreas Tille for the Debian distribution and
        can be used for any other usage of the program.

bed2bed_display 1.5.5                              March 2020                                 BED2BED_DISPLAY(1)

              - version 1.5.5 where options are:

       -d|--debug
              Produce Debug information

       -h|--help
              Show this Help text

       -f|--feature <ft>
              Set Feature name <ft>

       -o|--oformat <1|2>
              Set output Format (1:BED[Def] 2:BedGraph)

       --name <name>
              Set name for track name field [def. name=SGA-feature]

       --desc <desc>
              Set track description field [def. desc="ChIP-Seq Custom data"]

       --color <col>
              Define the track color in comma-separated RGB values [def. 100,100,100]

       --autoscale
              <on|off>     Data viewing paramenter: set auto-scale to UCSC data view [def=OFF]

       --always0
              <on|off>     Data viewing paramenter: always include zero [def=OFF]

       --wfunction
              <func>       Data viewing paramenter: windowing function [def=mean+whiskers|maximum|mean|minimum]

       --smoothing
              <grade>      Data viewing paramenter: smoothing window [def=OFF[0], <grade>=0,2..16]

       --visibility <mode>
              Display mode: [def=dense|full|hide] or [def=1|2|3]

              Convert BED file to BED format suitable for displaying ChIP-seq peaks.  Two formats are supported:
              1)  BED  Track  with Score field; 2) BedGraph.  For BED track format, only the graphical parameter
              'visibility' can be set.

       bed2bed_display - Convert BED file to BED format suitable for displaying ChIP-seq peaks.

bed2bed_display [options] [-a<minBEDscore>] [-b<maxBEDscore>] [<] <BEDfile|stdin>