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bp_dbsplit - script to split an input set of database(s) into smaller pieces

Author

       Jason Stajich, jason-at-bioperl-dot-org

perl v5.32.1                                       2021-08-15                                     BP_DBSPLIT(1p)

Description

       This script will take as input a list of filenames or a single file or from STDIN a sequence database and
       split the database into separate files of X numbers of sequences.  You specify X with the "--size/-s"
       parameter.  The input and output sequence format is any that is supported by bioperl
       (fasta,embl,genbank,gcg, swissprot, etc).

       You can specify the input data either as a single file with -i filename, or as a single file as an
       argument like

         % bp_dbsplit file1 file2

       or as a list of sequence data with

         % cat file1 file2 file3 | bp_dbsplit

       You'll want to use the "--prefix" to specify what the output prefix will be.

Feedback

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       User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments
       and suggestions preferably to the Bioperl mailing list.  Your participation is much appreciated.

         bioperl-l@bioperl.org                  - General discussion
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   ReportingBugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution.
       Bug reports can be submitted via the web:

         https://github.com/bioperl/bioperl-live/issues

Name

       bp_dbsplit - script to split an input set of database(s) into smaller pieces

Synopsis

         bp_dbsplit.PLS --size 50 [-i inputfile] [-if inputformat] [-of outputformat]
                     [--prefix outputprefix] [ < file1 file 2  OR file1 file2]

See Also