bp_process_sgd.pl - Massage SGD annotation flat files into a version suitable for the Generic Genome

       Lincoln Stein, lstein@cshl.org

       Copyright (c) 2002 Cold Spring Harbor Laboratory

       This library is free software; you can redistribute it and/or modify it under the same terms as Perl
       itself.  See DISCLAIMER.txt for disclaimers of warranty.

perl v5.32.1                                       2021-08-15                                 BP_PROCESS_SGD(1p)

       This script massages the SGD sequence annotation flat files located at
       ftp://genome-ftp.stanford.edu/pub/yeast/data_dump/feature/chromosomal_features.tab into a version of the
       GFF format suitable for display by the generic genome browser.

       To use this script, get the SGD chromosomal_features.tab file from the FTP site listed above, and run the
       following command:

         % bp_process_sgd.pl chromosomal_features.tab > yeast.gff

       The yeast.gff file can then be loaded into a Bio::DB::GFF database using the following command:

         % bulk_load_gff.pl -d <databasename> yeast.gff

       bp_process_sgd.pl - Massage SGD annotation flat files into a version suitable for the Generic Genome
       Browser

       Bio::DB::GFF, bulk_load_gff.pl, load_gff.pl

         % bp_process_sgd.pl chromosomal_features.tab > yeast.gff