bp_seqcut.pl - cut FASTA sequences with a given range

MattOates - Matt.Oates@bristol.ac.uk

Getopt::Long Used to parse command line options.  Pod::Usage Used for usage and help output.  Bio::SeqIO
       Used to cut up sequences and parse FASTA.

perl v5.32.1                                       2021-08-15                                      BP_SEQCUT(1p)

       A script to cut FASTA sequences with a given range `fastacut -s 1 -e 10 *.fasta` or `fastacut 1-10
       *.fasta`.  This is just a convenience wrapper around the Bio::SeqIO module. Useful if you wish to trim
       out a section of an alignment to build a profile of a specific region of sequence.

       2010-11-22 - Matt Oates First features added.

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       bp_seqcut.pl - cut FASTA sequences with a given range

        bp_seqcut.pl [options -h,-s,-e,-f,-w] <FILES>...
        bp_seqcut.pl [options -h,-f,-w] s-e <FILES>...

          -h this help message
          -s which residue to start cutting on
          -e which residue to finish cutting on
          -f format of the files, defaults to FASTA but you can specify anything supported by SeqIO from BioPerl
          -w hard wrap width, this might not be supported depending on which format you are using