bp_seqret - bioperl implementation of sequence fetch from local db (like EMBOSS seqret)

       Jason Stajich jason_AT_bioperl-dot-org

perl v5.32.1                                       2021-08-15                                      BP_SEQRET(1p)

       bp_seqret - bioperl implementation of sequence fetch from local db (like EMBOSS seqret)

       bp_seqret [-f/--format outputformat] [-o/--out/--outfile outfile] [-d/--db dbname] [-i/--id/-s/--seqname
       seqname1]

       Example usage:

          bp_seqret -f fasta -db db.fa -i seq1 -i seq2 > output.fas
          bp_seqret db.fa:seq1 output.fas
          bp_seqret db.fa:seq1 -o output.fas
          bp_seqret -db db.fa -o output.fas seq1 seq2 seq3
          bp_seqret -db db.fa seq1 seq2 seq3 output.fas
          bp_seqret -db db.fa seq1 seq2 seq3 - > output.fas

       The DB is expected to be a Fasta formatted sequence file with multiple sequences.

       Output format is Fasta by default.

       If no output filename is provided then output is written to STDOUT.  Providing '-' as the output filename
       will accomplish the same thing.