cathparse - Generates DCF file from raw CATH files.

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DOMAINATRIX 0.1.0+20100721                         08/11/2010                                      CATHPARSE(1e)

cathparse is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”).
       It is part of the "Utils:Database creation" command group(s).

       cathparse - Generates DCF file from raw CATH files.

Inputsection-listfileinfile
           This option specifies the name of raw CATH classification file (caths.list.vX.X) (input). The raw
           CATH parsable files (classification and description files) available from ftp.biochem.ucl.ac.uk
           (/pub/cathdata/v2.4). Default value: caths.list.v2.4

       -domfileinfile
           This option specifies the name of raw CATH classification file (domlist.vX.X) (input). The raw CATH
           parsable files (classification and description files) available from ftp.biochem.ucl.ac.uk
           (/pub/cathdata/v2.4). Default value: domlist.v2.4

       -namesfileinfile
           This option specifies the name of raw CATH classification file (CAT.names.all.vX.X) (input). The raw
           CATH parsable files (classification and description files) available from ftp.biochem.ucl.ac.uk
           (/pub/cathdata/v2.4). Default value: CAT.names.all.v2.4

   Outputsection-outfileoutfile
           This option specifies the name of CATH DCF file (domain classification file) (output). A 'domain
           classification file' contains classification and other data for domains from SCOP or CATH, in DCF
           format (EMBL-like). The files are generated by using SCOPPARSE and CATHPARSE. Domain sequence
           information can be added to the file by using DOMAINSEQS. Default value: Ecath.dat

       -logfileoutfile
           This option specifies the name of the CATHPARSE log file. Default value: cathparse.log

       cathparse is fully documented via the tfm(1) system.

cathparse-listfileinfile-domfileinfile-namesfileinfile-outfileoutfile-logfileoutfilecathparse-help