change_paired_read_orientation - Change the orientation of paired-end reads in a FASTA file

       All complex software has bugs lurking in it, and this program is no exception.  If you find a bug, please
       report         it         on         the         SourceForge         Tracker         for         Grinder:
       <http://sourceforge.net/tracker/?group_id=244196&atid=1124737>

       Bug   reports,  suggestions  and  patches  are  welcome.  Grinder's  code  is  developed  on  Sourceforge
       (<http://sourceforge.net/scm/?type=git&group_id=244196>) and  is  under  Git  revision  control.  To  get
       started with a patch, do:

          git clone git://biogrinder.git.sourceforge.net/gitroot/biogrinder/biogrinder

perl v5.32.0                                       2020-12-03                 CHANGE_PAIRED_READ_ORIENTATION(1p)

       Copyright 2009-2012 Florent ANGLY <florent.angly@gmail.com>

       Grinder  is  free  software:  you can redistribute it and/or modify it under the terms of the GNU General
       Public License (GPL) as published by the Free Software Foundation, either version 3 of  the  License,  or
       (at  your  option)  any  later  version.   Grinder is distributed in the hope that it will be useful, but
       WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS  FOR  A  PARTICULAR
       PURPOSE.   See  the  GNU General Public License for more details.  You should have received a copy of the
       GNU General Public License along with Grinder.  If not, see <http://www.gnu.org/licenses/>.

       Reverse the orientation, i.e. reverse-complement each right-hand paired-end read (ID ending in /2) in a
       FASTA file.

       change_paired_read_orientation - Change the orientation of paired-end reads in a FASTA file

       <in_fasta>
           FASTA file containing the reads to re-orient.

       <out_fasta>
           Output FASTA file where to write the reads.