checktrans - Reports STOP codons and ORF statistics of a protein

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EMBOSS 6.4.0                                       05/11/2012                                     CHECKTRANS(1e)

checktrans is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”).
       It is part of the "Nucleic:Gene finding,Nucleic:Translation" command group(s).

       checktrans - Reports STOP codons and ORF statistics of a protein

Inputsection-sequenceseqallRequiredsection-orfmlinteger
           Default value: 100

   Additionalsection-addlastboolean
           An asterisk in the protein sequence indicates the position of a STOP codon. Checktrans assumes that
           all ORFs end in a STOP codon. Forcing the sequence to end with an asterisk, if there is not one there
           already, makes checktrans treat the end as a potential ORF. If an asterisk is added, it is not
           included in the reported count of STOPs. Default value: Y

   Outputsection-outfileoutfile-outseqseqoutall
           Sequence file to hold output ORF sequences

       -outfeatfeatout
           File for output features

       checktrans is fully documented via the tfm(1) system.

checktrans-sequenceseqall-orfmlinteger [-addlastboolean] -outfileoutfile-outseqseqoutall-outfeatfeatoutchecktrans-help