logo
Free, Micro AI Code Reviews That Run on Git Commit
git-lrc git-lrc GitHub Install Now We'd appreciate a star git-lrc - Free, Micro AI Code Reviews That Run on Git Commit | Product Hunt git-lrc - Free, Micro AI Code Reviews That Run on Git Commit | Product Hunt

cif-merge - Merge the content of a modified PDB file into a mmCIF file

Author

       Written by Maarten L. Hekkelman <maarten@hekkelman.com>

Description

       Unfortunately, a lot of tools in the crystallographic area are still not capable of working with mmCIF
       files in a proper way, forcing you to feed them PDB files. Or, when they do support mmCIF, they write out
       mutilated files without lots of the original information contained in the input file.

       To remedy this, cif-merge can be used to create a new mmCIF file containing information from the
       processed PDB (or mmCIF) file and fill in the blanks using a donor mmCIF file.

       The input-file is the file that was processed by an old tool, missing the additional data.  The donor-file contains the extra information to be copied.  When output-file is not specified, the result is
       written to stdout.

Name

       cif-merge - Merge the content of a modified PDB file into a mmCIF file

Options

--verbose,-v
              Be more verbose, useful to diagnose validation errors.

Reporting Bugs

       Report bugs at https://github.com/PDB-REDO/cif-tools/issues

See Also

cif-diff, cif-grep, cif-validate, cif2pdb, mmCQL, pdb2cif.

version 1.0.5                                      2022-11-20                                       cif-merge(1)

Synopsis

       cif-merge [options] input-file donor-file [output-file]

See Also