cit2pmid - find candidate NCBI PubMed identifiers for a citation
Contents
Description
cit2pmid tries to identify NCBI PubMed identifiers corresponding to a supplied citation. Some modes
search an indexed local NCBI PubMed archive (as prepared by index-pubmed(1)).
Environment
EDIRECT_PUBMED_MASTER
Local archive directory to use. Expected to hold an absolute path; mandatory for any mode besides
-remote and -eutils.
Name
cit2pmid - find candidate NCBI PubMed identifiers for a citation
Options
-debug Trace some aspects of execution.
-strict
Perform stricter matching (only in -local mode, at least for now).
-remote
Use nquire-citmatch remote service (default).
-eutils
Use esearch remote service.
-local Use transmute-r2p (ref2pmid) for relaxed search with local archive.
-exact Use phrase-search for strict matching with local archive.
-verify
Query against local archive with strict (but not -exact) matching then confirm positive candidates
via citmatch.
-asnfile
Read NCBI Pub ASN.1 from file (- for standard input). Must be the only query specification.
-citfile
Read CITATION XML from file (- for standard input). Must be the only query specification.
-title|-TITLstr
Article title; may need other fields to disambiguate, especially if incomplete.
-authorstr
Author name (last name, optionally followed by initials); may appear twice, for first and last
authors. (Otherwise, taken to be first author only.)
-FAUTstr
Explicitly name first author.
-LAUTstr
Explicitly name last author.
-journal|-JOURstr
Journal name.
-year|-YEAR|-PDATstr
Publication year.
-volume|-VOLstr
Journal volume.
-issue|-ISSstr
Journal issue.
-page[s]|-PAGEstr
Journal page, or hyphenated range.
See Also
edict(1), esearch(1), fetch-pubmed(1), index-pubmed(1), nquire(1), phrase-search(1), ref2pmid(1), transmute(1). NCBI 2023-02-20 CIT2PMID(1)
Synopsis
cit2pmid [-debug] [-strict] [-remote|-eutils|-local|-exact|-verify] [-asnfile|-citfile]
[-title|-TITLstr] [-author|-FAUT|-LAUTstr] [-journal|-JOURstr] [-year|-YEAR|-PDATstr]
[-volume|-VOLstr] [-issue|-ISSstr] [-page[s]|-PAGEstr]
