cnvkit_import-picard - Convert Picard CalculateHsMetrics tabular output to CNVkit .cnn files.

       usage: cnvkit.py import-picard [-h] [-d DIRECTORY] targets [targets ...]

   positionalarguments:
       targets
              Sample coverage .csv files (target and antitarget).

   options:-h, --help
              show this help message and exit

       -d DIRECTORY, --output-dir DIRECTORY
              Output directory name.

cnvkit.py import-picard 0.9.10                      July 2023                            CNVKIT_IMPORT-PICARD(1)

       cnvkit_import-picard - Convert Picard CalculateHsMetrics tabular output to CNVkit .cnn files.

           The input file is generated by the PER_TARGET_COVERAGE option in the
           CalculateHsMetrics script in Picard tools.

           If 'antitarget' is in the input filename, the generated output filename will
           have the suffix '.antitargetcoverage.cnn', otherwise '.targetcoverage.cnn'.