compileSpliceCands - Find introns parsing a set of exon candidates in GFF format

       An exhaustive documentation can be found in the file /usr/share/doc/augustus/README.md.gz.

                                                                                           COMPILESPLICECANDS(1)

       AUGUSTUS was written by M. Stanke, O. Keller, S. König, L. Gerischer and L. Romoth.

       compileSpliceCands - Find introns parsing a set of exon candidates in GFF format

Parameters:-f <filename>
           potential splice sites in gff format

       -g <filename>
           genome file in fasta format

       -c <integer>
           defines the number of potential splice site every potential splice site itself is compared with

       -t <float>
           has to be between 0 and 1 and  defines how much the average coverage may differ

       -m <integer>
           defines how many bases around the splice site should be checked

       -d
           enables debugging output

       -i <integer>
           maximum length an Intron can be, default 500000 (human genome)

compileSpliceCands -f <splice candidates filename> -g <genome filename>