complex - Find the linguistic complexity in nucleotide sequences

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       the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

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EMBOSS 6.4.0                                       05/11/2012                                        COMPLEX(1e)

complex is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It
       is part of the "Nucleic:Composition" command group(s).

       complex - Find the linguistic complexity in nucleotide sequences

Inputsection-sequenceseqall-lwininteger
           Default value: 100

       -stepinteger
           Displacement of the window over the sequence Default value: 5

       -jmininteger
           Default value: 4

       -jmaxinteger
           Default value: 6

   Advancedsection-omniatoggle
           Calculate over a set of sequences Default value: N

       -siminteger
           Calculate the linguistic complexity by comparison with a number of simulations having a uniform
           distribution of bases

       -freqboolean
           Execute the simulation of a sequence based on the base frequency of the original sequence Default
           value: N

   Outputsection-printboolean
           Generate a file named UjTable containing the values of Uj for each word j in the real sequence(s) and
           in any simulated sequences Default value: N

       -outfileoutfile-ujtablefileoutfile
           Default value: complex.ujtable

       -outseqseqoutall

       complex is fully documented via the tfm(1) system.

complex-sequenceseqall-lwininteger-stepinteger-jmininteger-jmaxinteger-omniatoggle-siminteger-freqboolean-printboolean-outfileoutfile-ujtablefileoutfile-outseqseqoutallcomplex-help