cooler - sparse, compressed, binary persistent storage

        This manpage was written by Andreas Tille for the Debian distribution and
        can be used for any other usage of the program.

cooler 0.8.7                                        June 2020                                          COOLER(1)

       Cooler  is  a  support  library  for  a sparse, compressed, binary persistent storage format, also called
       cooler, used to store genomic interaction data, such as Hi-C contact matrices.

       The cooler file format is an implementation of a genomic matrix data model using HDF5  as  the  container
       format.  The  cooler  package  includes  a  suite  of  command  line tools and a Python API to facilitate
       creating, querying and manipulating cooler files.

       cooler - sparse, compressed, binary persistent storage

-v, --verbose
              Verbose logging.

       -d, --debug
              On error, drop into the post-mortem debugger shell.

       -V, --version
              Show the version and exit.

       -h, --help
              Show this message and exit.

   Commands:
       cload  Create a cooler from genomic pairs and bins.

       load   Create a cooler from a pre-binned matrix.

       merge  Merge multiple coolers with identical axes.

       coarsen
              Coarsen a cooler to a lower resolution.

       zoomify
              Generate a multi-resolution cooler file by coarsening.

       balance
              Out-of-core matrix balancing.

       info   Display a cooler's info and metadata.

       dump   Dump a cooler's data to a text stream.

       show   Display and browse a cooler in matplotlib.

       makebins
              Generate fixed-width genomic bins.

       digest Generate fragment-delimited genomic bins.

       csort  Sort and index a contact list.

       ls     List all coolers inside a file.

       cp     Copy a cooler from one file to another or within the same file.

       ln     Create a hard link to a cooler (rather than a true copy) in the...

       mv     Rename a cooler within the same file.

       tree   Display a file's data hierarchy.

       attrs  Display a file's attribute hierarchy.

cooler [OPTIONS] COMMAND [ARGS]...