coves-SE - detection of transfer RNA genes in genomic sequence

        This manpage was written by Nilesh Patra for the Debian distribution and
        can be used for any other usage of the program.

coves-SE 2.0.9+ds                                   July 2021                                        COVES-SE(1)

       FATAL: Usage: coves [-options] <CM file> <seqfile> where options are:

       -a     : show all pairs, not just Watson-Crick

       -g <gcfrac> : set expected background GC composition (default 0.5)

       -m     : mountain representation of structural alignment

       -s     : secondary structure string representation of

              structural alignment

       coves-SE - detection of transfer RNA genes in genomic sequence