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csg_sphericalorder - Part of the VOTCA package

Authors

       Written and maintained by the VOTCA Development Team <devs@votca.org>

Description

       !! EXPERIMENTAL !! Calculate spherical order parameter.
        Needs non-spherical beads in mapping.

Name

csg_sphericalorder - Part of the VOTCA package

Options

       Allowed options:

         -h [ --help ]             display this help and exit
         --verbose                 be loud and noisy
         --verbose1                be very loud and noisy
         -v [ --verbose2 ]         be extremly loud and noisy
         --top arg                 atomistic topology file
         --filter arg (=*)       filter molecule names
         --radialcut arg (=0)    radial cutoff: distance from center where bead is
                                 considered
         --minrad arg (=0)       minimal distance a parcle has to be apart from center
                                 to be considerd
         --refmol arg            Reference molecule
         --rbinw arg (=0)        Do multiple r_bins multiple histograms

       Mapping options:

         --cg arg                  coarse graining mapping and bond definitions
                                 (xml-file)
         --map-ignore arg          list of molecules to ignore separated by ;
         --no-map                  disable mapping and act on original trajectory

       Trajectory options:

         --trj arg                 atomistic trajectory file
         --begin arg (=0)          skip frames before this time (only works for
                                 Gromacs files)
         --first-frame arg (=0)    start with this frame
         --nframes arg             process the given number of frames

Synopsis

csg_sphericalorder [OPTIONS]

       csg_sphericalorder [--help]

See Also