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cyvcf2 - fast parsing of VCF and BCF including region-queries

Description

              fast vcf parsing with cython + htslib

Name

       cyvcf2 - fast parsing of VCF and BCF including region-queries

Options

-c, --chrom TEXT
              Specify what chromosome to include.

       -s, --start INTEGER
              Specify the start of region.

       -e, --end INTEGER
              Specify the end of the region.

       --include TEXT
              Specify what info field to include.

       --exclude TEXT
              Specify what info field to exclude.

       -i, --individual TEXT
              Only print genotype call for individual.

       --no-inds
              Do not print genotypes.

       --loglevel [DEBUG|INFO|WARNING|ERROR|CRITICAL]
              Set the level of log output.  [default: INFO]

       --silent
              Skip printing of vcf.

       --help Show this message and exit.

cyvcf2 0.31.1                                      March 2025                                          CYVCF2(1)

Synopsis

cyvcf2 [OPTIONS] <vcf_file>or-

See Also