dbiblast - Index a BLAST database
Contents
Bugs
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to
the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).
Copyright
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be
redistributed under the same terms as EMBOSS itself.
EMBOSS 6.4.0 05/11/2012 DBIBLAST(1e)
Description
dbiblast is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It
is part of the "Utils:Database indexing" command group(s).
Name
dbiblast - Index a BLAST database
Options
Inputsection-dbnamestring-directorydirectory
Default value: .
-filenamesstring
Default value: $(dbname)
Requiredsection-releasestring
Default value: 0.0
-datestring
Default value: 00/00/00
-seqtypelist
Default value: unknown
-blastversionlist
Default value: unknown
Advancedsection-fieldslist
Default value: acc
-excludestring-sortoptionsstring
Sort options, typically '-T .' to use current directory for work files and '-k 1,1' to force GNU sort
to use the first field Default value: -T . -k 1,1
-maxindexinteger-systemsortboolean
Default value: Y
-cleanupboolean
Default value: Y
-sourcefilebooleanOutputsection-outfileoutfile-indexoutdiroutdir
Default value: .
See Also
dbiblast is fully documented via the tfm(1) system.
Synopsis
dbiblast-dbnamestring-directorydirectory-filenamesstring-releasestring-datestring-seqtypelist-blastversionlist-fieldslist-excludestring-sortoptionsstring-maxindexinteger-systemsortboolean-cleanupboolean-sourcefileboolean-outfileoutfile-indexoutdiroutdirdbiblast-help
