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dbiblast - Index a BLAST database

Author

DebianMedPackagingTeam <debian-med-packaging@lists.alioth.debian.org>
           Wrote the script used to autogenerate this manual page.

Bugs

       Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to
       the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

Description

dbiblast is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It
       is part of the "Utils:Database indexing" command group(s).

Name

       dbiblast - Index a BLAST database

Options

Inputsection-dbnamestring-directorydirectory
           Default value: .

       -filenamesstring
           Default value: $(dbname)

   Requiredsection-releasestring
           Default value: 0.0

       -datestring
           Default value: 00/00/00

       -seqtypelist
           Default value: unknown

       -blastversionlist
           Default value: unknown

   Advancedsection-fieldslist
           Default value: acc

       -excludestring-sortoptionsstring
           Sort options, typically '-T .' to use current directory for work files and '-k 1,1' to force GNU sort
           to use the first field Default value: -T . -k 1,1

       -maxindexinteger-systemsortboolean
           Default value: Y

       -cleanupboolean
           Default value: Y

       -sourcefilebooleanOutputsection-outfileoutfile-indexoutdiroutdir
           Default value: .

See Also

       dbiblast is fully documented via the tfm(1) system.

Synopsis

dbiblast-dbnamestring-directorydirectory-filenamesstring-releasestring-datestring-seqtypelist-blastversionlist-fieldslist-excludestring-sortoptionsstring-maxindexinteger-systemsortboolean-cleanupboolean-sourcefileboolean-outfileoutfile-indexoutdiroutdirdbiblast-help

See Also