domainsse - Add secondary structure records to a DCF file.

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DOMAINATRIX 0.1.0+20100721                         08/11/2010                                      DOMAINSSE(1e)

domainsse is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”).
       It is part of the "Utils:Database creation" command group(s).

       domainsse - Add secondary structure records to a DCF file.

Inputsection-dcfinfileinfile
           This option specifies the name of the DCF file (domain classification file) (input). A 'domain
           classification file' contains classification and other data for domains from SCOP or CATH, in DCF
           format (EMBL-like). The files are generated by using SCOPPARSE and CATHPARSE. Domain sequence
           information can be added to the file by using DOMAINSEQS.

       -dccfdirdirectory
           This option specifies the location of the domain CCF file (clean coordinate files) (input). A 'clean
           cordinate file' contains protein coordinate and derived data for a single PDB file ('protein clean
           coordinate file') or a single domain from SCOP or CATH ('domain clean coordinate file'), in CCF
           format (EMBL-like). The files, generated by using PDBPARSE (PDB files) or DOMAINER (domains), contain
           'cleaned-up' data that is self-consistent and error-corrected. Records for residue solvent
           accessibility and secondary structure are added to the file by using PDBPLUS. Default value: ./

   RequiredsectionAdvancedsectionOutputsection-dcfoutfileoutfile
           This option specifies the name of the DCF file (domain classification file) with secondary structure
           records (output). A 'domain classification file' contains classification and other data for domains
           from SCOP or CATH, in DCF format (EMBL-like). The files are generated by using SCOPPARSE and
           CATHPARSE. Domain sequence information can be added to the file by using DOMAINSEQS.

       -logfileoutfile
           This option specifies the name of the DOMAINSSE log file. Default value: domainsse.log

       domainsse is fully documented via the tfm(1) system.

domainsse-dcfinfileinfile-dccfdirdirectory-dcfoutfileoutfile-logfileoutfiledomainsse-help