dotmatcher - Draw a threshold dotplot of two sequences

DebianMedPackagingTeam <debian-med-packaging@lists.alioth.debian.org>
           Wrote the script used to autogenerate this manual page.

       Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to
       the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

       This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be
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EMBOSS 6.4.0                                       05/11/2012                                     DOTMATCHER(1e)

dotmatcher is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”).
       It is part of the "Alignment:Dot plots" command group(s).

       dotmatcher - Draw a threshold dotplot of two sequences

Inputsection-asequencesequence-bsequencesequence-matrixfilematrix
           This is the scoring matrix file used when comparing sequences. By default it is the file 'EBLOSUM62'
           (for proteins) or the file 'EDNAFULL' (for nucleic sequences). These files are found in the 'data'
           directory of the EMBOSS installation.

   Additionalsection-windowsizeinteger
           Default value: 10

       -thresholdinteger
           Default value: 23

   Outputsection-stretchtoggle
           Display a non-proportional graph Default value: N

       -graphgraph-xygraphxygraph

       dotmatcher is fully documented via the tfm(1) system.

dotmatcher-asequencesequence-bsequencesequence [-matrixfilematrix] [-windowsizeinteger]
                  [-thresholdinteger] -stretchtoggle-graphgraph-xygraphxygraphdotmatcher-help