e-mem - finds position and length of all Maximal Exact Matches (MEMs) for very large genomes

       This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage
       of the program.

e-mem 0.0+20160706                                  May 2017                                            E-MEM(1)

       e-mem  finds and outputs the position and length of all maximal exact matches (MEMs) between <query-file>
       and <reference-file>

       e-mem - finds position and length of all Maximal Exact Matches (MEMs) for very large genomes

-n     match only the characters a, c, g, or t they can be in upper or in lower case

       -l     set the minimum length of a match. The default length is 50

       -b     compute forward and reverse complement matches

       -r     only compute reverse complement matches

       -c     report the query-position of a reverse complement match relative to the original query sequence

       -F     force 4 column output format regardless of the number of reference sequence input

       -L     show the length of the query sequences on the header line

       -d     set the split size. The default value is 1

       -t     number of threads. The default is 1 thread

       -h     show possible options

e-mem [options]  <reference-file><query-file>