edamclean - Validate and fix EDAM OBO ontology
Contents
Bugs
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to
the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).
Copyright
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be
redistributed under the same terms as EMBOSS itself.
EMBOSS 6.4.0 05/11/2012 EDAMCLEAN(1e)
Description
edamclean is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”).
It is part of the "Ontology:EDAM" command group(s).
Name
edamclean - Validate and fix EDAM OBO ontology
Options
Inputsection-edaminfileinfile
Default value: /homes/jison/edam/EDAM.obo
-taxdirectorydirectoryRequiredsection-modeselection
Default value: Report only
AdvancedsectionOutputsection-edamoutfileoutfile
Default value: EDAM_out.obo
-logfileoutfile
Default value: EDAM_out.log
-xmlfileoutfile
Default value: EDAM_out.xml
-xmloutdiroutdirSee Also
edamclean is fully documented via the tfm(1) system.
Synopsis
edamclean-edaminfileinfile-taxdirectorydirectory-modeselection-edamoutfileoutfile-logfileoutfile-xmlfileoutfile-xmloutdiroutdiredamclean-help
