edialign - Local multiple alignment of sequences

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EMBOSS 6.4.0                                       05/11/2012                                       EDIALIGN(1e)

edialign is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It
       is part of the "Alignment:Multiple" command group(s).

       edialign - Local multiple alignment of sequences

Inputsection-sequencesseqsetAdditionalsection-nucmodelist
           Nucleic acid sequence alignment mode (simple, translated or mixed) Default value: n

       -revcompboolean
           Default value: N

       -overlapwselection
           By default overlap weights are used when Nseq =<35 but you can set this to 'yes' or 'no' Default
           value: default (when Nseq =< 35)

       -linkagelist
           Clustering method to construct sequence tree (UPGMA, minimum linkage or maximum linkage) Default
           value: UPGMA

       -maxfraglinteger
           Default value: 40

       -fragmatboolean
           Default value: N

       -fragsiminteger
           Default value: 4

       -itscoreboolean
           Default value: N

       -thresholdfloat
           Default value: 0.0

   Outputsection-maskboolean
           Default value: N

       -dostarsboolean
           Default value: N

       -starnuminteger
           Default value: 4

       -outfileoutfile-outseqseqoutall

       edialign is fully documented via the tfm(1) system.

edialign-sequencesseqset-nucmodelist-revcompboolean [-overlapwselection] [-linkagelist]
                [-maxfraglinteger] -fragmatboolean-fragsiminteger [-itscoreboolean] [-thresholdfloat]
                -maskboolean-dostarsboolean-starnuminteger-outfileoutfile-outseqseqoutalledialign-help