einverted - Finds inverted repeats in nucleotide sequences

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EMBOSS 6.4.0                                       05/11/2012                                      EINVERTED(1e)

einverted is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”).
       It is part of the "Nucleic:Repeats,Nucleic:2D structure" command group(s).

       einverted - Finds inverted repeats in nucleotide sequences

Inputsection-sequenceseqallRequiredsection-gapinteger
           Default value: 12

       -thresholdinteger
           Default value: 50

       -matchinteger
           Default value: 3

       -mismatchinteger
           Default value: -4

   Additionalsection-maxrepeatinteger
           Maximum separation between the start of repeat and the end of the inverted repeat. Default value:
           2000

   Outputsection-outfileoutfile-outseqseqout
           The sequence of the inverted repeat regions without gap characters.

       einverted is fully documented via the tfm(1) system.

einverted-sequenceseqall-gapinteger-thresholdinteger-matchinteger-mismatchinteger
                 [-maxrepeatinteger] -outfileoutfile-outseqseqouteinverted-help