existDB - management of existDB files

       This program is part of libkmer.

       existDB - management of existDB files

-mersizemersize
              Use the specified mersize when building existDB tables.

       -buildsome.fastaprefix
              Build an existDB on all mers in some.fasta and save the tables into prefix.

       -describeprefix
              Reports the state of some existDB file.

       -testfilessome.fastaprefix
              Build  an existDB table from some.fasta.  Write that table to disk.  Load the table back.  Compare
              that each mer in some.fasta is present in all three existDB tables created earlier.

       -testexistencesome.fasta
              Build an existDB table from some.fasta, check that every mer in some.fasta can  be  found  in  the
              table.  Does not guarantee that every mer in the table is found in the file.

       -testexhaustivesome.fastasome.meryl
              Build an existDB table from some.fasta, check _EVERY_ mer for existence.  Complain if a mer exists
              in the table but not in the meryl(1) database.  Assumes some.meryl is the mercount of some.fasta.

meryl(1), positionDB(1)

existDB 0~20150520+2004                             May 2015                                          EXISTDB(1)

existDB [-mersizemersize] -buildsome.fastaprefixexistDB-describeprefixexistDB-testfilessome.fastaprefixexistDB-testexistencesome.fastaexistDB-testexhaustivesome.fastasome.meryl