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extractTranscriptInfo.py - extracts information about transcripts from reference Fasta file

Description

              This  program extracts information about transcripts from reference Fasta file.  This is partially
              replaced by using SAM header, which however does not  include  information  about  transcript-gene
              grouping.   Current  version of parseAlignment extracts this information from a reference sequence
              file (making this script obsolete).

Name

       extractTranscriptInfo.py - extracts information about transcripts from reference Fasta file

Options

-h, --help
              show this help message and exit

       -v, --verbose
              Verbose output

       -t TYPE, --type=TYPE
              Type of file to parse: ensembl, cuff, other

extractTranscriptInfo.py 0.7.5+dfsg              September 2021                      EXTRACTTRANSCRIPTINFO.PY(1)

Synopsis

extractTranscriptInfo.py [options] <inputFile><outputFile>

See Also