extractTranscriptInfo.py - extracts information about transcripts from reference Fasta file
Contents
Description
This program extracts information about transcripts from reference Fasta file. This is partially
replaced by using SAM header, which however does not include information about transcript-gene
grouping. Current version of parseAlignment extracts this information from a reference sequence
file (making this script obsolete).
Name
extractTranscriptInfo.py - extracts information about transcripts from reference Fasta file
Options
-h, --help
show this help message and exit
-v, --verbose
Verbose output
-t TYPE, --type=TYPE
Type of file to parse: ensembl, cuff, other
extractTranscriptInfo.py 0.7.5+dfsg September 2021 EXTRACTTRANSCRIPTINFO.PY(1)
Synopsis
extractTranscriptInfo.py [options] <inputFile><outputFile>
