famap - prepare Fasta sequence database for re-PCR searches

       This manual page was written by Andreas Tille <tille@debian.org> for the Debian system (but may  be  used
       by others).  Permission is granted to copy, distribute and/or modify this document under the terms of the
       GNU General Public License, Version 2 any later version published by the Free Software Foundation.

       On Debian systems, the complete text of the GNU General Public License can be found in /usr/share/common-
       licenses/GPL.

Fasta converter for e-PCR version 2.3.9            April 2008                                           FASTA(1)

       The  program  famap  is  part  of  the e-PCR suite and is used to build mmapped-file from FASTA files for
       reverse e-PCR searches

        famap -tN -b genome.famap org/chr_*.fa

        fahash -b genome.hash -w 12 -f3 ${PWD}/genome.famap

        re-PCR -s genome.hash -n1 -g1 ACTATTGATGATGA AGGTAGATGTTTTT 120-200

       See famap(1) and re-pcr(1)

       famap - prepare Fasta sequence database for re-PCR searches

       where cvt (conversion table) is one of:

              off - as is (default)

              n   - nucleotide [acgtnACGTN] allowed,

              N   - nucleotide uppercase allowed [ACGTN]

              nx  - nucleotide with ambiguity codes allowed

              NX  - nucleotide with ambiguity codes uppercase

       /usr/share/doc/ncbi-epcr/README.txt

       bioperl(1), e-pcr(1), famap(1) and re-pcr(1)

       famap [-hV] -b mmapped-file [-t cvt] [fafile ...]

       famap [-hV] -d mmapped-file [ord ...]

       famap [-hV] -l mmapped-file [ord ...]