fastaq_filter - Filter sequences to get a subset of them

       usage: fastaq_filter [options] <infile> <outfile>

       Filters a sequence file by sequence length and/or by name matching a regular expression

   positionalarguments:
       infile Name of input file to be filtered

       outfile
              Name of output file

   options:-h, --help
              show this help message and exit

       --min_length INT
              Minimum length of sequence to keep [0]

       --max_length INT
              Maximum length of sequence to keep [inf]

       --regex REGEX
              If given, only reads with a name matching the regular expression will be kept

       --ids_file FILENAME
              If given, only reads whose ID is in th given file will be used. One ID per line of file.

       -v, --invert
              Only keep sequences that do not match the filters

   Matefileforreadpairsoptions:--mate_in FILENAME
              Name of mates input file. If used, must also provide --mate_out--mate_out FILENAME
              Name of mates output file

       --both_mates_pass
              By  default,  if  either mate passes filter, then both reads output. Use this flag to require that
              both reads of a pair pass the filter

fastaq_filter 3.17.0                              December 2024                                 FASTAQ-FILTER(1)

       fastaq_filter - Filter sequences to get a subset of them