garnier - Predicts protein secondary structure using GOR method

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EMBOSS 6.4.0                                       05/11/2012                                        GARNIER(1e)

garnier is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It
       is part of the "Protein:2D Structure" command group(s).

       garnier - Predicts protein secondary structure using GOR method

Inputsection-sequenceseqallAdvancedsection-idcinteger
           In their paper, GOR mention that if you know something about the secondary structure content of the
           protein you are analyzing, you can do better in prediction. 'idc' is an index into a set of arrays,
           dharr[] and dsarr[], which provide 'decision constants' (dch, dcs), which are offsets that are
           applied to the weights for the helix and sheet (extend) terms. So, idc=0 says don't use the decision
           constant offsets, and idc=1 to 6 indicates that various combinations of dch,dcs offsets should be
           used.

   Outputsection-outfilereport

       garnier is fully documented via the tfm(1) system.

garnier-sequenceseqall-idcinteger-outfilereportgarnier-help