gbseqget - format sequences from GenBank as an XML GBSet
Contents
Description
gbseqget retrieves biological sequence data from GenBank (according to an input list of GI accession
numbers) and prints it out as an XML GBSet document.
Name
gbseqget - format sequences from GenBank as an XML GBSet
Notes
The GBSet format is deprecated in favor of INSDSet, which you can produce by running insdseqget in place
of gbseqget.
Options
A summary of options is included below.
- Print usage message
-dfilename
Input file name for date list (desired accessions, one per line, followed by a blank line and a
list of allowed dates, also one per line)
-ifilename
Input file name for GI list (default = stdin)
-mn/p/b
Molecule type:
n Nucleotide (default)
p Protein
b Both
-n Return only new records (for which the given GI refers to an old version)
-ofilename
Output file name for the XML GBSet (default = stdout)
-v Fetch SNP Variations
See Also
asn2gb(1), insdseqget(1). NCBI 2006-04-14 GBSEQGET(1)
Synopsis
gbseqget [-] [-dfilename] [-ifilename] [-mn/p/b] [-n] [-ofilename] [-v]
