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glistmaker - generate a list of all unique k-mers in input file with their frequencies

Examples

        You could find some usage examples in /usr/share/doc/genometester/README.GenomeTester4.md

Name

       glistmaker - generate a list of all unique k-mers in input file with their frequencies

Options

-v, --version           - print version information and exit

       -h, --help              - print this usage screen and exit

       -w, --wordlength NUMBER - specify index wordsize (1-32) (default 16)

       -c, --cutoff NUMBER     - specify frequency cut-off (default 1)

       -o, --outputname STRING - specify output name (default "out")

       --num_threads           - number of threads the program is run on (default MIN(8, num_input_files))

       --max_tables            - maximum number of temporary tables (default MAX(num_threads, 2))

       --table_size            - maximum size of the temporary table (default 500000000)

       -D                      - increase debug level

See Also

glistquery(1), glistcompare(1), gmer_caller(1), gmer_counter(1)

GenomeTester                                       31 May 2018                                     GLISTMAKER(1)

Synopsis

glistmaker<INPUTFILES> [OPTIONS]

See Also